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Broader Terms:
   Haslea 
   Holophaga/Acidobacteria ensemble 
   Paralemanea 
   clinical samples 
   environmental samples 
   unclassified 
   uncultured 

More Specific:
   uncultured 
   uncultured ectomycorrhiza 
 
 


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61.  Culturing-Enriched Metabarcoding Analysis of the Oryctes rhinoceros Gut Microbiome.LinkIT
Shelomi M, Chen MJ
Insects, 2020
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0

62.  Modified SHI medium supports growth of a disease-state subgingival polymicrobial community in vitro.LinkIT
Lamont EI, Gadkari A, Kerns KA, To TT, Daubert D, Kotsakis G, Bor B, He X, McLean JS
Molecular oral microbiology Mol Oral Microbiol Modified SHI medium supports growth of a disease-state subgingival polymicrobial community in vitro. 10.1111/omi.12323 Developing a laboratory model of oral polymicrobial communities is essential for in vitro studies of the transition from healthy to diseased oral plaque. SHI medium is an enriched growth medium capable of supporting in vitro biofilms with similar diversity to healthy supragingival inocula; however, this medium does not maintain the diversity of gram-negative bacteria more associated with subgingival plaque. Here, we systematically modified SHI medium components to investigate the impacts of varying nutrients and develop a medium capable of supporting a specific disease-state subgingival community. A diseased subgingival plaque sample was inoculated in SHI medium with increasing concentrations of sucrose (0%, 0.1%, 0.5%), fetal bovine serum (FBS) (0%, 10%, 20%, 30%, 50%), and mucin (0.1, 2.5, 8.0 g/L) and grown for 48 hrs, then the 16S rRNA profiles of the resulting biofilms were examined. In total, these conditions were able to capture 89 of the 119 species and 43 of the 51 genera found in the subgingival inoculum. Interestingly, biofilms grown in high sucrose media, although dominated by acidogenic Firmicutes with a low final pH, contained several uncultured taxa from the genus Treponema, information that may aid culturing these periodontitis-associated fastidious organisms. Biofilms grown in a modified medium (here named subSHI-v1 medium) with 0.1% sucrose and 10% FBS had a high diversity closest to the inoculum and maintained greater proportions of many gram-negative species of interest from the subgingival periodontal pocket (including members of the genera Prevotella and Treponema, and the Candidate Phyla Radiation phylum Saccharibacteria), and therefore best represented the disease community. © 2020 The Authors. Molecular Oral Microbiology published by John Wiley & Sons Ltd. Lamont Eleanor I EI https://orcid.org/0000-0001-6537-7755 Department of Periodontics, University of Washington, Seattle, WA, USA. Gadkari Archita A Department of Periodontics, University of Washington, Seattle, WA, USA. Kerns Kristopher A KA https://orcid.org/0000-0002-4380-0062 Department of Periodontics, University of Washington, Seattle, WA, USA. To Thao T TT https://orcid.org/0000-0002-7416-6201 Department of Periodontics, University of Washington, Seattle, WA, USA. Daubert Diane D https://orcid.org/0000-0002-7307-4102 Department of Periodontics, University of Washington, Seattle, WA, USA. Kotsakis Georgios G https://orcid.org/0000-0002-8635-9422 Department of Periodontics, University of Texas Health Science Center, San Antonio, TX, USA. Bor Batbileg B https://orcid.org/0000-0002-1797-1730 Department of Microbiology, The Forsyth Institute, Cambridge, MA, USA. Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, MA, USA. He Xuesong X https://orcid.org/0000-0002-3333-9188 Department of Microbiology, The Forsyth Institute, Cambridge, MA, USA. Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, MA, USA. McLean Jeffrey S JS https://orcid.org/0000-0001-9934-5137 Department of Periodontics, University of Washington, Seattle, WA, USA. eng K99 DE027719 DE NIDCR NIH HHS United States 1K99DE027719-01 DE NIDCR NIH HHS United States DE027199 DE NIDCR NIH HHS United States T90DE021984 DE NIDCR NIH HHS United States T90 DE021984 DE NIDCR NIH HHS United States 1R01DE023810 DE NIDCR NIH HHS United States R00 DE027719 DE NIDCR NIH HHS United States R01 DE023810 DE NIDCR NIH HHS United States 1R01DE026186 DE NIDCR NIH HHS United States University of Texas Health Science Center at San Antonio Journal Article 2020 11 11 Denmark Mol Oral Microbiol 101524770 2041-1006 D In vitro biofilm model SHI-media periodontitis subgingival microbiota 2020 09 28 2020 11 04 2020 11 06 2020 11 12 6 0 2020 11 12 6 0 2020 11 11 6 3 aheadofprint 33174294 10.1111/omi.12323 REFERENCES, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>63.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Microbial communities network analysis of anaerobic reactors fed with bovine and swine slurry.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Vendruscolo ECG, Mesa D, Rissi DV, Meyer BH, de Oliveira Pedrosa F, de Souza EM, Cruz LM<br><font color=gray><i>The Science of the total environment, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>64.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Cardiorespiratory performance capacity and airway microbiome in patients following primary repair of esophageal atresia.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Arneitz C, Windhaber J, Castellani C, Kienesberger B, Klymiuk I, Fasching G, Till H, Singer G<br><font color=gray><i>Pediatric research, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>65.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title><i>Aestipascuomyces</i><i>dupliciliberans</i> gen. nov, sp. nov., the First Cultured Representative of the Uncultured SK4 Clade from Aoudad Sheep and Alpaca.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Stabel M, Hanafy RA, Schweitzer T, Greif M, Aliyu H, Flad V, Young D, Lebuhn M, Elshahed MS, Ochsenreither K, Youssef NH<br><font color=gray><i>Microorganisms, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>66.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>ITGA6+ Human Testicular Cell Populations Acquire a Mesenchymal Rather than Germ Cell Transcriptional Signature during Long-Term Culture.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Struijk RB, Mulder CL, van Daalen SKM, de Winter-Korver CM, Jongejan A, Repping S, van Pelt AMM<br><font color=gray><i>International journal of molecular sciences, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>67.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Prenatal diagnosis and molecular cytogenetic characterization of mosaicism for a small supernumerary marker chromosome derived from 2q11.1-q12.1 associated with fetal bilateral radial dysplasia.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Chen CP, Lin CJ, Chen SW, Wu FT, Chern SR, Wu PS, Chen YY, Chen WL, Wang W<br><font color=gray><i>Taiwanese journal of obstetrics & gynecology, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>68.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Prenatal diagnosis of maternal uniparental disomy 5 by amniocentesis associated with confined placental mosaicism for trisomy 5 and fetal trisomy 21 in a pregnancy.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Chen CP, Chern SR, Wang LK, Wu PS, Wu FT, Chen YY, Town DD, Pan CW, Wang W<br><font color=gray><i>Taiwanese journal of obstetrics & gynecology, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>69.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Metagenomic and Metatranscriptomic Analyses Revealed Uncultured Bacteroidales Populations as the Dominant Proteolytic Amino Acid Degraders in Anaerobic Digesters.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Mei R, Nobu MK, Narihiro T, Liu WT<br><font color=gray><i>Frontiers in microbiology, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>70.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>An analysis of non-cultivable bacteria using WEKA.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Patil PC, Panchal PS, Madiwale S, Tale VS<br><font color=gray><i>Bioinformation, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br><br><br><table cellspacing=0 cellpadding=0 align=center><tr valign=bottom><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=6><img src=p.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=1><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=2><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=3><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=4><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=5><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=6><img src=o_yellow.png border=0></a></td><td align=center><img src=o_red.png border=0></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=8><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=9><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=10><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=11><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=12><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=13><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=14><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=15><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=16><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=8><img src=rtal.png border=0></a></td></tr><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=6>«</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=1>1</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=2>2</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=3>3</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=4>4</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=5>5</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=6>6</a></td><td align=center>7</td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=8>8</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=9>9</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=10>10</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=11>11</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=12>12</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=13>13</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=14>14</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=15>15</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=16>16</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=8>»</a></td></tr></table></table></tr></table></td><script src="http://www.google-analytics.com/urchin.js" type="text/javascript"> </script> <script type="text/javascript"> _uacct = "UA-634822-1"; urchinTracker(); </script> </BODY> </HTML>