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Broader Terms:
   Haslea 
   Holophaga/Acidobacteria ensemble 
   Paralemanea 
   clinical samples 
   environmental samples 
   unclassified 
   uncultured 

More Specific:
   uncultured 
   uncultured ectomycorrhiza 
 
 


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41.  Tick-borne rickettsiae in Midwestern region of Republic of Korea.LinkIT
Park HJ, Kim J, Choi YJ, Kim HC, Klein TA, Chong ST, Jiang J, Richards AL, Jang WJ
Acta tropica, 2021
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0

42.  The gammaproteobacterium Achromatium forms intracellular amorphous calcium carbonate and not (crystalline) calcite.LinkIT
Benzerara K, Bolzoni R, Monteil C, Beyssac O, Forni O, Alonso B, Asta MP, Lefevre C
Geobiology Geobiology The gammaproteobacterium Achromatium forms intracellular amorphous calcium carbonate and not (crystalline) calcite. 199-213 10.1111/gbi.12424 Achromatium is a long known uncultured giant gammaproteobacterium forming intracellular CaCO3 that impacts C and S geochemical cycles functioning in some anoxic sediments and at oxic-anoxic boundaries. While intracellular CaCO3 granules have first been described as Ca oxalate then colloidal CaCO3 more than one century ago, they have often been referred to as crystalline solids and more specifically calcite over the last 25 years. Such a crystallographic distinction is important since the respective chemical reactivities of amorphous calcium carbonate (ACC) and calcite, hence their potential physiological role and conditions of formation, are significantly different. Here, we analyzed the intracellular CaCO3 granules of Achromatium cells from Lake Pavin using a combination of Raman microspectroscopy and scanning electron microscopy. Granules in intact Achromatium cells were unequivocally composed of ACC. Moreover, ACC spontaneously transformed into calcite when irradiated at high laser irradiance during Raman analyses. Few ACC granules also transformed spontaneously into calcite in lysed cells upon cell death and/or sample preparation. Overall, the present study supports the original claims that intracellular Ca-carbonates in Achromatium are amorphous and not crystalline. In that sense, Achromatium is similar to a diverse group of Cyanobacteria and a recently discovered magnetotactic alphaproteobacterium, which all form intracellular ACC. The implications for the physiology and ecology of Achromatium are discussed. Whether the mechanisms responsible for the preservation of such unstable compounds in these bacteria are similar to those involved in numerous ACC-forming eukaryotes remains to be discovered. Last, we recommend to future studies addressing the crystallinity of CaCO3 granules in Achromatium cells recovered from diverse environments all over the world to take care of the potential pitfalls evidenced by the present study. © 2020 John Wiley & Sons Ltd. Benzerara Karim K https://orcid.org/0000-0002-0553-0137 Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), UMR CNRS 7590, Muséum National d'Histoire Naturelle, Sorbonne Université, Paris, France. Bolzoni Romain R CEA Cadarache, UMR7265 Institute of Biosciences and Biotechnologies of Aix-Marseille, CEA, CNRS, Aix-Marseille University, Saint-Paul-lez-Durance, France. Monteil Caroline C https://orcid.org/0000-0002-2834-6834 CEA Cadarache, UMR7265 Institute of Biosciences and Biotechnologies of Aix-Marseille, CEA, CNRS, Aix-Marseille University, Saint-Paul-lez-Durance, France. Beyssac Olivier O Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), UMR CNRS 7590, Muséum National d'Histoire Naturelle, Sorbonne Université, Paris, France. Forni Olivier O https://orcid.org/0000-0001-6772-9689 Institut de Recherche en Astrophysique et Planétologie (CNRS, Univ. Toulouse, CNES), Toulouse, France. Alonso Béatrice B CEA Cadarache, UMR7265 Institute of Biosciences and Biotechnologies of Aix-Marseille, CEA, CNRS, Aix-Marseille University, Saint-Paul-lez-Durance, France. Asta Maria P MP https://orcid.org/0000-0001-6502-6744 IFSTTAR, CNRS, University Grenoble Alpes, Grenoble, France. Lefevre Christopher C https://orcid.org/0000-0002-1692-0245 CEA Cadarache, UMR7265 Institute of Biosciences and Biotechnologies of Aix-Marseille, CEA, CNRS, Aix-Marseille University, Saint-Paul-lez-Durance, France. eng CNRS: "Programme national Ecosphère Continentale et Côtière (EC2CO)" ANR-18-CE31-0003 French National Research Agency ANR-19-CE01-0005-02 French National Research Agency 747597 European Union's Horizon 2020 Journal Article 2020 12 21 England Geobiology 101185472 1472-4669 IM ACC Raman intracellular biomineralization micromanipulation 2020 07 01 2020 10 21 2020 11 26 2020 12 22 6 0 2020 12 22 6 0 2020 12 21 17 14 ppublish 33347698 10.1111/gbi.12424 REFERENCES, 2021</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>43.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>The pico-sized Mamiellophyceae and a novel Bathycoccus clade from the summer plankton of Russian Arctic Seas and adjacent waters.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Belevich TA, Milyutina IA, Abyzova GA, Troitsky AV<br><font color=gray><i>FEMS microbiology ecology, 2021</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>44.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Thermoplasmata and Nitrososphaeria as dominant archaeal members in acid mine drainage sediment of Malanjkhand Copper Project, India.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Gupta A, Saha A, Sar P<br><font color=gray><i>Archives of microbiology, 2021</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>45.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>metaVaR: Introducing metavariant species models for reference-free metagenomic-based population genomics.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Laso-Jadart R, Ambroise C, Peterlongo P, Madoui MA<br><font color=gray><i>PloS one, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>46.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Benchmarking of single-virus genomics: a new tool for uncovering the virosphere.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Garcia-Heredia I, Bhattacharjee AS, Fornas O, Gomez ML, Martínez JM, Martinez-Garcia M<br><font color=gray><i>Environmental microbiology Environ Microbiol Benchmarking of single-virus genomics: a new tool for uncovering the virosphere. 10.1111/1462-2920.15375 Metagenomics and single-cell genomics have enabled the discovery of relevant uncultured microbes. Recently, single-virus genomics (SVG), although still in an incipient stage, has opened new avenues in viral ecology by allowing the sequencing of one single virus at a time. The investigation of methodological alternatives and optimization of existing procedures for SVG is paramount to deliver high-quality genomic data. We report a sequencing dataset of viral single-amplified genomes (vSAGs) from cultured and uncultured viruses obtained by applying different conditions in each SVG step, from viral preservation and novel whole-genome amplification (WGA) to sequencing platforms and genome assembly. Sequencing data showed that cryopreservation and mild fixation were compatible with WGA, although fresh samples delivered better genome quality data. The novel TruPrime WGA, based on primase-polymerase features, and WGA-X employing a thermostable phi29 polymerase, were proven to be with sufficient sensitivity in SVG. The Oxford Nanopore (ON) sequencing platform did not provide a significant improvement of vSAG assembly compared to Illumina alone. Finally, the SPAdes assembler performed the best. Overall, our results represent a valuable genomic dataset that will help to standardized and advance new tools in viral ecology. © 2020 Society for Applied Microbiology and John Wiley & Sons Ltd. Garcia-Heredia Inmaculada I Department of Physiology, Genetics, and Microbiology, University of Alicante, Alicante, Spain. Bhattacharjee Ananda S AS Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA. Fornas Oscar O https://orcid.org/0000-0003-2017-9100 Flow Cytometry Unit, Centre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology (BIST), Barcelona, Spain. Flow Cytometry Unit, Departament de Ciències Experimentals i de la Salut, Universitat Pompeu Fabra (UPF), Barcelona, Spain. Gomez Monica L ML Department of Physiology, Genetics, and Microbiology, University of Alicante, Alicante, Spain. Martínez Joaquín M JM Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA. Martinez-Garcia Manuel M https://orcid.org/0000-0001-5056-1525 Department of Physiology, Genetics, and Microbiology, University of Alicante, Alicante, Spain. eng 5334 Gordon and Betty Moore Foundation CGL2013-40564-R Secretaría de Estado de Investigación, Desarrollo e Innovación RTI2018-094248-B-I00 Secretaría de Estado de Investigación, Desarrollo e Innovación SAF2013-49267-EXP Secretaría de Estado de Investigación, Desarrollo e Innovación Journal Article 2020 12 28 England Environ Microbiol 100883692 1462-2912 IM 2020 03 25 2020 12 11 2020 12 20 2020 12 29 6 0 2020 12 29 6 0 2020 12 28 12 37 aheadofprint 33368907 10.1111/1462-2920.15375 References, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>47.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Differences in Microbial Community and Metabolites in Litter Layer of Plantation and Original Korean Pine Forests in North Temperate Zone.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Wang Y, Li T, Li C, Song F<br><font color=gray><i>Microorganisms, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>48.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Fisetin Regulates Gut Microbiota and Exerts Neuroprotective Effect on Mouse Model of Parkinson's Disease.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Chen TJ, Feng Y, Liu T, Wu TT, Chen YJ, Li X, Li Q, Wu YC<br><font color=gray><i>Frontiers in neuroscience, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>49.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Planctomycetes as Host-Associated Bacteria: A Perspective That Holds Promise for Their Future Isolations, by Mimicking Their Native Environmental Niches in Clinical Microbiology Laboratories.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Kaboré OD, Godreuil S, Drancourt M<br><font color=gray><i>Frontiers in cellular and infection microbiology, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>50.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>High Representation of Archaea Across All Depths in Oxic and Low-pH Sediment Layers Underlying an Acidic Stream.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Distaso MA, Bargiela R, Brailsford FL, Williams GB, Wright S, Lunev EA, Toshchakov SV, Yakimov MM, Jones DL, Golyshin PN, Golyshina OV<br><font color=gray><i>Frontiers in microbiology, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br><br><br><table cellspacing=0 cellpadding=0 align=center><tr valign=bottom><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=4><img src=p.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=1><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=2><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=3><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=4><img src=o_yellow.png border=0></a></td><td align=center><img src=o_red.png border=0></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=6><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=7><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=8><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=9><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=10><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=11><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=12><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=13><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=14><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=6><img src=rtal.png border=0></a></td></tr><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=4>«</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=1>1</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=2>2</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=3>3</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=4>4</a></td><td align=center>5</td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=6>6</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=7>7</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=8>8</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=9>9</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=10>10</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=11>11</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=12>12</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=13>13</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=14>14</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=6>»</a></td></tr></table></table></tr></table></td><script src="http://www.google-analytics.com/urchin.js" type="text/javascript"> </script> <script type="text/javascript"> _uacct = 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