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Broader Terms:
   Haslea 
   Holophaga/Acidobacteria ensemble 
   Paralemanea 
   clinical samples 
   environmental samples 
   unclassified 
   uncultured 

More Specific:
   uncultured 
   uncultured ectomycorrhiza 
 
 


External Resources:



111.  Innovations to culturing the uncultured microbial majority.LinkIT
Lewis WH, Tahon G, Geesink P, Sousa DZ, Ettema TJG
Nature reviews. Microbiology, 2021
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0

112.  Physiological stabilization, community characterization, and nitrogen degradation dynamics in an anammox consortium from estuarine sediments.LinkIT
Ronzón Bravo JJ, de María Cuervo-López F, Andrade Torres A, Arteaga-Vázquez MA, Martínez Hernández S
Water environment research : a research publication of the Water Environment Federation Water Environ Res Physiological stabilization, community characterization, and nitrogen degradation dynamics in an anammox consortium from estuarine sediments. 636-644 10.1002/wer.1466 Anammox is a cost-effective and sustainable process for nitrogen removal; however, the production of a physiologically stable inoculum is a critical point in the start-up process. In this work, estuarine sediments were used as incubation seeds to obtain cultures with stable anammox activity. Assays were performed in batch cultures fed with stoichiometric amounts of ammonium and nitrite, analyzing physiological response variables and the microbial community. Estuarine sediments showed a stable anammox process after 90 days, consuming ammonium and nitrite simultaneously with concomitant generation of N2 and nitrate in stoichiometric amounts. In kinetic assays, substrates were fully consumed after 210 hr, exhibiting N2 and nitrate yields of 0.85 and 0.10, respectively. The microbial community analysis using PCR-DGGE indicated the presence of uncultured anammox bacteria and members of the genus Candidatus Jettenia. The results evidenced the achievement of anammox cultures, although their start-up and kinetic characteristics were less favorable than those recorded in man-made systems. PRACTITIONER POINTS: Estuarine sediments were used as incubation seeds to obtain cultures with stable anammox activity. The sediments were fed with stoichiometric amounts of ammonium and nitrite, analyzing the physiological response variables and the microbial community. Sediments showed a stable anammox process after 90 days, converting the substrates into N2 and nitrate according to stoichiometry. Anammox cultures were achieved although their start-up and kinetic characteristics were less favorable than those recorded in man-made systems. Microbial community analysis using PCR-DGGE indicated the presence of uncultured anaerobic ammonia-oxidizing bacterium and members of genus Candidatus Jettenia. © 2020 Water Environment Federation. Ronzón Bravo Jaime J JJ Instituto de Biotecnología y Ecología Aplicada (INBIOTECA), Universidad Veracruzana, Xalapa, Mexico. de María Cuervo-López Flor F Departamento de Biotecnología, Universidad Autónoma Metropolitana-Iztapalapa, Iztapalapa, Mexico. Andrade Torres Antonio A Instituto de Biotecnología y Ecología Aplicada (INBIOTECA), Universidad Veracruzana, Xalapa, Mexico. Arteaga-Vázquez Mario A MA Instituto de Biotecnología y Ecología Aplicada (INBIOTECA), Universidad Veracruzana, Xalapa, Mexico. Martínez Hernández Sergio S https://orcid.org/0000-0003-4552-1769 Instituto de Biotecnología y Ecología Aplicada (INBIOTECA), Universidad Veracruzana, Xalapa, Mexico. eng 443649 Mexican National Council of Science and Technology (CONACYT) CB 2014-241100 Mexican National Council of Science and Technology (CONACYT) Journal Article 2020 11 01 United States Water Environ Res 9886167 1061-4303 0 Ammonium Compounds 0 Nitrites N762921K75 Nitrogen IM Ammonium Compounds Anaerobiosis Bacteria genetics Bioreactors Humans Nitrites Nitrogen Oxidation-Reduction anammox consortium community characterization estuary sediments nitrogen degradation physiological stabilization 2020 08 25 2020 06 22 2020 10 08 2020 10 20 6 0 2021 4 7 6 0 2020 10 19 6 4 ppublish 33073480 10.1002/wer.1466 References, 2021</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>113.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Shotgun metagenomics and microscopy indicate diverse cyanophytes, other bacteria, and microeukaryotes in the epimicrobiota of a northern Chilean wetland Nostoc (Cyanobacteria).</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Satjarak A, Graham LE, Piotrowski MJ, Trest MT, Wilcox LW, Cook ME, Knack JJ, Arancibia-Avila P<br><font color=gray><i>Journal of phycology, 2021</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>114.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Genome-wide analysis of the Firmicutes illuminates the diderm/monoderm transition.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Taib N, Megrian D, Witwinowski J, Adam P, Poppleton D, Borrel G, Beloin C, Gribaldo S<br><font color=gray><i>Nature ecology & evolution, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>115.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Bacterial communities of sponges from the wetland ecosystem of Little Rann of Kutch, India with particular reference to Planctomycetes.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Kumar G, Radha V, Jagadeeshwari U, Sasikala C, Venkata Ramana C<br><font color=gray><i>3 Biotech, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>116.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>State of the Art in the Culture of the Human Microbiota: New Interests and Strategies.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Tidjani Alou M, Naud S, Khelaifia S, Bonnet M, Lagier JC, Raoult D<br><font color=gray><i>Clinical microbiology reviews, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>117.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Seasonal Regime Shift in the Viral Communities of a Permafrost Thaw Lake.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Girard C, Langlois V, Vigneron A, Vincent WF, Culley AI<br><font color=gray><i>Viruses, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>118.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Seasonal and Geographical Transitions in Eukaryotic Phytoplankton Community Structure in the Atlantic and Pacific Oceans.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Choi CJ, Jimenez V, Needham DM, Poirier C, Bachy C, Alexander H, Wilken S, Chavez FP, Sudek S, Giovannoni SJ, Worden AZ<br><font color=gray><i>Frontiers in microbiology, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>119.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Pipeline for Targeted Meta-Proteomic Analyses to Assess the Diversity of Cattle Rumen Microbial Urease.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Zhang X, Zhao S, He Y, Zheng N, Yan X, Wang J<br><font color=gray><i>Frontiers in microbiology, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>120.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Metagenomic Exploration of Plastic Degrading Microbes for Biotechnological Application.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Purohit J, Chattopadhyay A, Teli B<br><font color=gray><i>Current genomics, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br><br><br><table cellspacing=0 cellpadding=0 align=center><tr valign=bottom><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=11><img src=p.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=2><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=3><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=4><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=5><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=6><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=7><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=8><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=9><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=10><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=11><img src=o_yellow.png border=0></a></td><td align=center><img src=o_red.png border=0></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=13><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=14><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=15><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=16><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=17><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=18><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=19><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=20><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=21><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=13><img src=rtal.png border=0></a></td></tr><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=11>«</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=2>2</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=3>3</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=4>4</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=5>5</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=6>6</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=uncultured+Raphidophyceae&category=l&client=pubmed&startPage=7>7</a></td><td align=center><a 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