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uBio  Web  Results 1 - 10 of about 17 Broader Terms:    Asterids     lamiids  More Specific:    Boraginaceae (borage)     Garryales     Gentianales     Icacinaceae     Lamiales     Oncothecaceae     Solanales     Vahliaceae     lamiids      Latest Articles on lamiids from uBioRSS Boraginaceae Ivo Antu?ek - BioLib External Resources: 1.  Correlation Analysis Reveals an Important Role of GC Content in Accumulation of Deletion Mutations in the Coding Region of Angiosperm Plastomes. Yu Y, Li HT, Wu YH, Li DZ Journal of molecular evolution, 2021 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 2.  Comparative genome/transcriptome analysis probes Boraginales' phylogenetic position, WGDs in Boraginales, and key enzyme genes in the alkannin/shikonin core pathway. Tang CY, Li S, Wang YT, Wang X Molecular ecology resources Mol Ecol Resour Comparative genome/transcriptome analysis probes Boraginales' phylogenetic position, WGDs in Boraginales, and key enzyme genes in the alkannin/shikonin core pathway. 228-241 10.1111/1755-0998.13104 Boraginales (the forget-me-not order) is a core group within the lamiids clade. However, until now, no genome from Boraginales has been reported, and published transcriptomes are also rare. Here, we report the first Boraginales species de novo genome (i.e. Echium plantagineum genome) and seven other Boraginales species transcriptomes to probe three issues: (i) Boraginales' phylogenetic position within the lamiids clade; (ii) potential whole genome duplications (WGDs) in Boraginales; and (iii) candidate key enzyme genes in the alkannin/shikonin core pathway. The results showed that: (i) Boraginales was most probably closer to the Solanales/Gentianales clade than the Lamiales clade, at least based on the single-copy orthologous genes from genome/transcriptome data; (ii) after the gamma (?) event, Boraginaceae (classified into the Boraginales I clade) probably underwent at least two rounds of WGD, whereas Heliotropiaceae and Ehretiaceae (classified into the Boraginales II clade) probably underwent only one round of WGD; and (iii) several candidate key enzyme genes in the alkannin/shikonin core pathway were inferred, e.g. genes corresponding to geranyl cyclase, naphthol hydroxylase and O-acyl transferase. © 2019 John Wiley & Sons Ltd. Tang Cheng-Yi CY https://orcid.org/0000-0001-5672-695X School of the Environment, Nanjing University, Nanjing, China. Li Song S School of the Environment, Nanjing University, Nanjing, China. Biomarker Technologies Corporation, Beijing, China. Wang Yun-Tong YT Biomarker Technologies Corporation, Beijing, China. Wang Xi X Biomarker Technologies Corporation, Beijing, China. eng 14380058 Chinese Fundamental Research Funds for the Central Universities Comparative Study Journal Article 2019 11 15 England Mol Ecol Resour 101465604 1755-098X 0 Naphthoquinones 0 Plant Proteins 075CRZ9995 alkannin 3IK6592UBW shikonin IM Biosynthetic Pathways Gene Duplication Gene Expression Profiling Genome, Plant Magnoliopsida classification enzymology genetics metabolism Naphthoquinones metabolism Phylogeny Plant Proteins genetics metabolism Transcriptome Boraginales' phylogenetic position Echium plantagineum genome alkannin/shikonin pathway whole genome duplications 2019 07 06 2019 10 08 2019 10 14 2019 10 19 6 0 2020 6 2 6 0 2019 10 19 6 0 ppublish 31625679 10.1111/1755-0998.13104