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Synonyms:
   Rana boylii (Foothill yellow legged frog) 

Broader Terms:
   Amerana 
   Anura (frogs) 
   Rana (true frogs) 

More Specific:
   Rana boylii muscosa 
   Rana boylii sierrae 
 
 
Latest Articles on Rana boylii from uBioRSS
Significant population genetic structuring but a lack of phylogeographic st... - Australian Journal of Zoology
Projecting Invasion Risk of Non-Native Watersnakes (Nerodia fasciata and Ne... - PubMed: species


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Did you mean: Rana boyli ?

Common Names: Rana pata amarilla, foothill yellow-legged frog, Foothill yellow legged frog



1.  Spatial and temporal patterns of environmental DNA detection to inform sampling protocols in lentic and lotic systems.LinkIT
Bedwell ME, Goldberg CS
Ecology and evolution, 2020
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0

2.  Insights into conformation and membrane interactions of the acyclic and dicarba-bridged brevinin-1BYa antimicrobial peptides.LinkIT
Timmons PB, O'Flynn D, Conlon JM, Hewage CM
European biophysics journal : EBJ, 2019
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0

3.  Structural and positional studies of the antimicrobial peptide brevinin-1BYa in membrane-mimetic environments.LinkIT
Timmons PB, O'Flynn D, Conlon JM, Hewage CM
Journal of peptide science : an official publication of the European Peptide Society J Pept Sci Structural and positional studies of the antimicrobial peptide brevinin-1BYa in membrane-mimetic environments. e3208 10.1002/psc.3208 Brevinin-1BYa (FLPILASLAAKFGPKLFCLVTKKC), first isolated from skin secretions of the foothill yellow-legged frog Rana boylii, shows broad-spectrum activity, being particularly effective against opportunistic yeast pathogens. The structure of brevinin-1BYa was investigated in various solution and membrane-mimicking environments by proton nuclear magnetic resonance (1 H-NMR) spectroscopy and molecular modelling. The peptide does not possess a secondary structure in aqueous solution. In a 33% 2,2,2-trifluoroethanol (TFE-d3 )-H2 O solvent mixture, as well as in membrane-mimicking sodium dodecyl sulfate and dodecylphosphocholine micelles, the peptide's structure is characterised by a flexible helix-hinge-helix motif, with the hinge located at the Gly13 /Pro14 residues, and the two ?-helices extending from Pro3 to Phe12 and from Pro14 to Thr21 . Positional studies involving the peptide in sodium dodecyl sulfate and dodecylphosphocholine micelles using 5-doxyl-labelled stearic acid and manganese chloride paramagnetic probes show that the peptide's helical segments lie parallel to the micellar surface, with the residues on the hydrophobic face of the amphipathic helices facing towards the micelle core and the hydrophilic residues pointing outwards, suggesting that the peptide exerts its biological activity by a non-pore-forming mechanism. © 2019 European Peptide Society and John Wiley & Sons, Ltd. Timmons Patrick Brendan PB https://orcid.org/0000-0002-7425-472X UCD School of Biomolecular and Biomedical Science, UCD Centre for Synthesis and Chemical Biology, UCD Conway Institute, University College Dublin, Dublin, Ireland. O'Flynn Donal D https://orcid.org/0000-0001-6713-3682 ProVerum Medical Limited, Trinity Translational Medicine Institute, Trinity Centre for Health Sciences, Ulster University, St James's Hospital, Dublin, Ireland. Conlon J Michael JM https://orcid.org/0000-0002-4343-1551 Diabetes Research Group, School of Biomedical Sciences, Coleraine, Northern Ireland. Hewage Chandralal M CM https://orcid.org/0000-0002-6626-3829 UCD School of Biomolecular and Biomedical Science, UCD Centre for Synthesis and Chemical Biology, UCD Conway Institute, University College Dublin, Dublin, Ireland. eng University College Dublin Journal Article England J Pept Sci 9506309 1075-2617 0 Amphibian Proteins 0 Antimicrobial Cationic Peptides 0 Micelles 107-73-3 Phosphorylcholine 145963-49-1 brevinin-1 protein, Rana 368GB5141J Sodium Dodecyl Sulfate 53949-18-1 dodecylphosphocholine IM Amphibian Proteins chemistry Antimicrobial Cationic Peptides chemistry Hydrophobic and Hydrophilic Interactions Micelles Models, Molecular Nuclear Magnetic Resonance, Biomolecular Phosphorylcholine analogs & derivatives chemistry Protein Structure, Secondary Sodium Dodecyl Sulfate chemistry AMP NMR brevinin modelling peptides 2019 05 10 2019 07 04 2019 07 12 2019 11 14 6 0 2019 11 14 6 0 2020 4 9 6 0 ppublish 31721374 10.1002/psc.3208 REFERENCES, 2019</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>4.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Hybridization between two parapatric ranid frog species in the northern Sierra Nevada, California, USA.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Peek RA, Bedwell M, O'Rourke SM, Goldberg C, Wengert GM, Miller MR<br><font color=gray><i>Molecular ecology Mol Ecol Hybridization between two parapatric ranid frog species in the northern Sierra Nevada, California, USA. 4636-4647 10.1111/mec.15236 Contact zones between species provide a unique opportunity to test whether taxa can hybridize or not. Cross-breeding or hybridization between closely related taxa can promote gene flow (introgression) between species, adaptation, or even speciation. Though hybridization events may be short-lived and difficult to detect in the field, genetic data can provide information about the level of introgression between closely related taxa. Hybridization can promote introgression between species, which may be an important evolutionary mechanism for either homogenization (reversing initial divergence between species) or reproductive isolation (potentially leading to speciation). Here, we used thousands of genetic markers from nuclear DNA to detect hybridization between two parapatric frog species (Rana boylii and Rana sierrae) in the Sierra Nevada of California. Based on principal components analysis, admixture, and analysis of heterozygosity at species diagnostic SNPs, we detected two F1 hybrid individuals in the Feather River basin, as well as a weak signal of introgression and gene flow between the frog species compared with frog populations from two other adjacent watersheds. This study provides the first documentation of hybridization and introgression between these two species, which are of conservation concern. © 2019 John Wiley & Sons Ltd. Peek Ryan A RA 0000-0002-9577-6885 Center for Watershed Sciences, University of California, Davis, CA, USA. Department of Animal Science, University of California, Davis, CA, USA. Bedwell Mallory M School of the Environment, Washington State University, Pullman, WA, USA. O'Rourke Sean M SM Department of Animal Science, University of California, Davis, CA, USA. Goldberg Caren C School of the Environment, Washington State University, Pullman, WA, USA. Wengert Greta M GM Integral Ecology Research Center, Blue Lake, CA, USA. Miller Michael R MR Center for Watershed Sciences, University of California, Davis, CA, USA. Department of Animal Science, University of California, Davis, CA, USA. eng Journal Article Research Support, Non-U.S. Gov't 2019 10 04 England Mol Ecol 9214478 0962-1083 IM Animals California Chimera genetics Gene Flow genetics Genetic Speciation Hybridization, Genetic genetics Polymorphism, Single Nucleotide genetics Principal Component Analysis Ranidae classification genetics Rana boylii Rana sierrae frogs hybridization introgression parapatry 2018 11 30 2019 08 19 2019 08 27 2019 9 9 6 0 2020 6 17 6 0 2019 9 9 6 0 ppublish 31495012 10.1111/mec.15236 REFERENCES, 2019</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>5.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>An empirical pipeline for choosing the optimal clustering threshold in RADseq studies.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>McCartney-Melstad E, Gidi? M, Shaffer HB<br><font color=gray><i>Molecular ecology resources Mol Ecol Resour An empirical pipeline for choosing the optimal clustering threshold in RADseq studies. 1195-1204 10.1111/1755-0998.13029 Genomic data are increasingly used for high resolution population genetic studies including those at the forefront of biological conservation. A key methodological challenge is determining sequence similarity clustering thresholds for RADseq data when no reference genome is available. These thresholds define the maximum permitted divergence among allelic variants and the minimum divergence among putative paralogues and are central to downstream population genomic analyses. Here we develop a novel set of metrics to determine sequence similarity thresholds that maximize the correct separation of paralogous regions and minimize oversplitting naturally occurring allelic variation within loci. These metrics empirically identify the threshold value at which true alleles at opposite ends of several major axes of genetic variation begin to incorrectly separate into distinct clusters, allowing researchers to choose thresholds just below this value. We test our approach on a recently published data set for the protected foothill yellow-legged frog (Rana boylii). The metrics recover a consistent pattern of roughly 96% similarity as a threshold above which genetic divergence and data missingness become increasingly correlated. We provide scripts for assessing different clustering thresholds and discuss how this approach can be applied across a wide range of empirical data sets. © 2019 John Wiley & Sons Ltd. McCartney-Melstad Evan E https://orcid.org/0000-0002-1803-1126 Department of Ecology and Evolutionary Biology, La Kretz Center for California Conservation Science, and Institute of the Environment and Sustainability, University of California, Los Angeles, California. Gidi? Müge M https://orcid.org/0000-0002-5623-1698 Faculty of Arts and Science, Department of Biochemistry, Kütahya Dumlup?nar University, Kutahya, Turkey. Shaffer H Bradley HB https://orcid.org/0000-0002-5795-9242 Department of Ecology and Evolutionary Biology, La Kretz Center for California Conservation Science, and Institute of the Environment and Sustainability, University of California, Los Angeles, California. eng U.S. Fish and Wildlife Service 1257648 Division of Environmental Biology (National Science Foundation) The Scientific and Technological Council of Turkey (TUBITAK) Bureau of Reclamation California Department of Transportation Journal Article 2019 06 01 England Mol Ecol Resour 101465604 1755-098X IM Animals Cluster Analysis Computational Biology methods Genetics, Population methods Metagenomics methods Phylogeny Ranidae classification genetics Sequence Analysis, DNA methods Rana boylii RADseq parameter choice population genomics 2017 09 16 2019 04 18 2019 04 22 2019 5 7 6 0 2020 1 18 6 0 2019 5 7 6 0 ppublish 31058458 10.1111/1755-0998.13029 REFERENCES, 2019</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>6.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Population genomic data reveal extreme geographic subdivision and novel conservation actions for the declining foothill yellow-legged frog.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>McCartney-Melstad E, Gidi? M, Shaffer HB<br><font color=gray><i>Heredity, 2018</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>7.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Rapid extirpation of a North American frog coincides with an increase in fungal pathogen prevalence: Historical analysis and implications for reintroduction.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Adams AJ, Pessier AP, Briggs CJ<br><font color=gray><i>Ecology and evolution, 2017</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>8.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>CITIZEN SCIENTISTS MONITOR A DEADLY FUNGUS THREATENING AMPHIBIAN COMMUNITIES IN NORTHERN COASTAL CALIFORNIA, USA.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>, Pope KL, Wengert GM, Foley JE, Ashton DT, Botzler RG<br><font color=gray><i>Journal of wildlife diseases, 2016</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>9.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Projecting invasion risk of non-native watersnakes (Nerodia fasciata and Nerodia sipedon) in the western United States.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Rose JP, Todd BD<br><font color=gray><i>PloS one, 2014</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>10.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Expression analysis and identification of antimicrobial peptide transcripts from six North American frog species.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Robertson LS, Fellers GM, Marranca JM, Kleeman PM<br><font color=gray><i>Diseases of aquatic organisms, 2013</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br><br><br><table cellspacing=0 cellpadding=0 align=center><tr valign=bottom><td align=center><img src=p.png border=0></td><td align=center><img src=o_red.png border=0></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rana+boylii&category=l&client=pubmed&startPage=2><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rana+boylii&category=l&client=pubmed&startPage=3><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rana+boylii&category=l&client=pubmed&startPage=2><img src=rtal.png border=0></a></td></tr><td align=center></td><td align=center>1</td><td align=center><a href=http://ubio.org/portal/index.php?search=Rana+boylii&category=l&client=pubmed&startPage=2>2</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rana+boylii&category=l&client=pubmed&startPage=3>3</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rana+boylii&category=l&client=pubmed&startPage=2>»</a></td></tr></table></table></tr></table></td><script src="http://www.google-analytics.com/urchin.js" type="text/javascript"> </script> <script type="text/javascript"> _uacct = "UA-634822-1"; urchinTracker(); </script> </BODY> </HTML>