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Synonyms:
   Triticum aestivum vulgare 

Broader Terms:
   Triticum (wheat) 
 
 
Latest Articles on Triticum aestivum L. subsp. vulgare (Vill.) Thell. from uBioRSS
Can elevated CO 2 combined with high temperature ameliorate the effect of ... - Functional Plant Biology


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1.  Multi-trait genomic selection can increase selection accuracy for deoxynivalenol accumulation resulting from fusarium head blight in wheat.LinkIT
Gaire R, de Arruda MP, Mohammadi M, Brown-Guedira G, Kolb FL, Rutkoski J
The plant genomePlant GenomeMulti-trait genomic selection can increase selection accuracy for deoxynivalenol accumulation resulting from fusarium head blight in wheat.e2018810.1002/tpg2.20188Multi-trait genomic prediction (MTGP) can improve selection accuracy for economically valuable 'primary' traits by incorporating data on correlated secondary traits. Resistance to Fusarium head blight (FHB), a fungal disease of wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.), is evaluated using four genetically correlated traits: incidence (INC), severity (SEV), Fusarium damaged kernels (FDK), and deoxynivalenol content (DON). Both FDK and DON are primary traits; DON evaluation is expensive and usually requires several months for wheat breeders to get results from service laboratories performing the evaluations. We evaluated MTGP for DON using three soft red winter wheat breeding datasets: two diversity panels from the University of Illinois (IL) and Purdue University (PU) and a dataset consisting of 2019-2020 University of Illinois breeding cohorts. For DON, relative to single-trait (ST) genomic prediction, MTGP including phenotypic data for secondary traits on both validation and training sets, resulted in 23.4 and 10.6% higher predictive abilities in IL and PU panels, respectively. The MTGP models were advantageous only when secondary traits were included in both training and validation sets. In addition, MTGP models were more accurate than ST models only when FDK was included, and once FDK was included in the model, adding additional traits hardly improved accuracy. Evaluation of MTGP models across testing cohorts indicated that MTGP could increase accuracy by more than twofold in the early stages. Overall, we show that MTGP can increase selection accuracy for resistance to DON accumulation in wheat provided FDK is evaluated on the selection candidates.© 2022 The Authors. The Plant Genome published by Wiley Periodicals LLC on behalf of Crop Science Society of America.GaireRupeshRhttps://orcid.org/0000-0001-7350-8516Crop Sciences, Univ. of Illinois at Urbana-Champaign, 1102 S. Goodwin Avenue, Urbana, IL, 61801, USA.de ArrudaMarcio PaisMPH.M. Clause, Inc., 9241 Mace Blvd., Davis, CA, 95618, USA.MohammadiMohsenMhttps://orcid.org/0000-0002-4536-1200Agronomy Dep., Purdue Univ., 915 W State St, West Lafayette, IN, 47907, USA.Brown-GuediraGinaGUSDA-ARS Plant Science Research & Crop and Soil Sciences, North Carolina State University, Williams Hall 4114A, Raleigh, NC, 27695, USA.KolbFrederic LFLCrop Sciences, Univ. of Illinois at Urbana-Champaign, 1102 S. Goodwin Avenue, Urbana, IL, 61801, USA.RutkoskiJessicaJCrop Sciences, Univ. of Illinois at Urbana-Champaign, 1102 S. Goodwin Avenue, Urbana, IL, 61801, USA.engJournal Article20220119United StatesPlant Genome1012739191940-3372IM20210713202111182022119722202212060202212060aheadofprint3504358210.1002/tpg2.20188REFERENCES, 2022</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>2.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Genome-wide analysis of the NAAT, DMAS, TOM, and ENA gene families in maize suggests their roles in mediating iron homeostasis.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Zhang X, Xiao K, Li S, Li J, Huang J, Chen R, Pang S, Zhou X<br><font color=gray><i>BMC plant biology, 2022</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>3.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Mussel Shells, a Valuable Calcium Resource for the Pharmaceutical Industry.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Mititelu M, Stanciu G, Dr?g?nescu D, Ioni?? AC, Neac?u SM, Dinu M, Stefan-van Staden RI, Moro?an E<br><font color=gray><i>Marine drugs, 2021</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>4.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Dietary habits of lesser bandicoot rat (Bandicota Bengalensis) in an agro-ecosystem, Pothwar Plateau, Pakistan.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Baig A, Mahmood T, Munawar N, Saman A, Razzaq A, Akrim F, Fatima H, Farooq M, Khan AA, Irshad N<br><font color=gray><i>Brazilian journal of biology = Revista brasleira de biologia, 2021</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>5.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Pangenomics in crop improvement-from coding structural variations to finding regulatory variants with pangenome graphs.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Zanini SF, Bayer PE, Wells R, Snowdon RJ, Batley J, Varshney RK, Nguyen HT, Edwards D, Golicz AA<br><font color=gray><i>The plant genomePlant GenomePangenomics in crop improvement-from coding structural variations to finding regulatory variants with pangenome graphs.e2017710.1002/tpg2.20177Since the first reported crop pangenome in 2014, advances in high-throughput and cost-effective DNA sequencing technologies facilitated multiple such studies including the pangenomes of oilseed rape (Brassica napus L.), soybean [Glycine max (L.) Merr.], rice (Oryza sativa L.), wheat (Triticum aestivum L.), and barley (Hordeum vulgare L.). Compared with single-reference genomes, pangenomes provide a more accurate representation of the genetic variation present in a species. By combining the genomic data of multiple accessions, pangenomes allow for the detection and annotation of complex DNA polymorphisms such as structural variations (SVs), one of the major determinants of genetic diversity within a species. In this review we summarize the current literature on crop pangenomics, focusing on their application to find candidate SVs involved in traits of agronomic interest. We then highlight the potential of pangenomes in the discovery and functional characterization of noncoding regulatory sequences and their variations. We conclude with a summary and outlook on innovative data structures representing the complete content of plant pangenomes including annotations of coding and noncoding elements and outcomes of transcriptomic and epigenomic experiments.© 2021 The Authors. The Plant Genome published by Wiley Periodicals LLC on behalf of Crop Science Society of America.ZaniniSilvia FSFhttps://orcid.org/0000-0002-9137-8783Dep. of Plant Breeding, IFZ Research Centre for Biosystems, Land Use and Nutrition, Justus Liebig Univ. Giessen, Giessen, 35392, Germany.BayerPhilipp EPEhttps://orcid.org/0000-0001-8530-3067School of Biological Sciences and Institute of Agriculture, Univ. of Western Australia, Perth, Western Australia, Australia.WellsRachelRhttps://orcid.org/0000-0002-1280-7472Dep. of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, NR47UH, UK.SnowdonRod JRJhttps://orcid.org/0000-0001-5577-7616Dep. of Plant Breeding, IFZ Research Centre for Biosystems, Land Use and Nutrition, Justus Liebig Univ. Giessen, Giessen, 35392, Germany.BatleyJacquelineJhttps://orcid.org/0000-0002-5391-5824School of Biological Sciences and Institute of Agriculture, Univ. of Western Australia, Perth, Western Australia, Australia.VarshneyRajeev KRKhttps://orcid.org/0000-0002-4562-9131Center of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India.State Agricultural Biotechnology Centre, Centre for Crop Food Innovation, Food Futures Institute, Murdoch Univ., Murdoch, WA, Australia.NguyenHenry THTDivision of Plant Sciences, Univ. of Missouri, Columbia, MO, USA.EdwardsDavidDhttps://orcid.org/0000-0001-7599-6760School of Biological Sciences and Institute of Agriculture, Univ. of Western Australia, Perth, Western Australia, Australia.GoliczAgnieszka AAAhttps://orcid.org/0000-0002-9711-4826Dep. of Plant Breeding, IFZ Research Centre for Biosystems, Land Use and Nutrition, Justus Liebig Univ. Giessen, Giessen, 35392, Germany.engJournal Article20211213United StatesPlant Genome1012739191940-3372IM20210514202110072021121484220211215602021121560aheadofprint3490440310.1002/tpg2.20177REFERENCES, 2021</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>6.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Allelopathic Effects of Essential Oils on Seed Germination of Barley and Wheat.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Zheljazkov VD, Jeliazkova EA, Astatkie T<br><font color=gray><i>Plants (Basel, Switzerland), 2021</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>7.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>The barley immune receptor Mla recognizes multiple pathogens and contributes to host range dynamics.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Bettgenhaeuser J, Hernández-Pinzón I, Dawson AM, Gardiner M, Green P, Taylor J, Smoker M, Ferguson JN, Emmrich P, Hubbard A, Bayles R, Waugh R, Steffenson BJ, Wulff BBH, Dreiseitl A, Ward ER, Moscou MJ<br><font color=gray><i>Nature communications, 2021</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>8.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Ice structuring protein extract of Hordeum vulgare var. dolma grain reduces drip loss and loss of soluble vitamin content in peas during frozen storage.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Kashyap P, Kumar S<br><font color=gray><i>Cryobiology, 2021</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>9.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Genome-wide Identification and Evolutionary Analysis of NBS-LRR Genes From <i>Secale cereale</i>.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Qian LH, Wang Y, Chen M, Liu J, Lu RS, Zou X, Sun XQ, Zhang YM<br><font color=gray><i>Frontiers in genetics, 2021</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>10.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>In Silico and Transcription Analysis of Trehalose-6-phosphate Phosphatase Gene Family of Wheat: Trehalose Synthesis Genes Contribute to Salinity, Drought Stress and Leaf Senescence.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Islam MA, Rahman MM, Rahman MM, Jin X, Sun L, Zhao K, Wang S, Sikdar A, Noor H, Jeon JS, Zhang W, Sun D<br><font color=gray><i>Genes, 2021</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br><br><br><table cellspacing=0 cellpadding=0 align=center><tr valign=bottom><td align=center><img src=p.png border=0></td><td align=center><img src=o_red.png border=0></td><td align=center><a href=http://ubio.org/portal/index.php?search=Triticum+aestivum+L.+subsp.+vulgare+%28Vill.%29+Thell.&category=l&client=pubmed&startPage=2><img src=o_yellow.png border=0></a></td><td align=center><a 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