Pubmed    Pubmed Central
uBio Home | uBioRSS

WebSearchLiteratureMolecularImages

 uBio  Web Results 1 - 10 of about 218

Synonyms:
   Rhipidoxylomyia excavata 

Broader Terms:
   Rhipidoxylomyia 
 
 


External Resources:



1.  Phylogenomics of the epigenetic toolkit reveals punctate retention of genes across eukaryotes.LinkIT
Weiner AKM, Cerón-Romero MA, Yan Y, Katz LA
Genome biology and evolution, 2020
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0

2.  Trypanosomatid selenophosphate synthetase structure, function and interaction with selenocysteine lyase.LinkIT
da Silva MTA, Silva IRE, Faim LM, Bellini NK, Pereira ML, Lima AL, de Jesus TCL, Costa FC, Watanabe TF, Pereira HD, Valentini SR, Zanelli CF, Borges JC, Dias MVB, da Cunha JPC, Mittra B, Andrews NW, Thiemann OH
PLoS neglected tropical diseases, 2020
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0

3.  A Uniquely Complex Mitochondrial Proteome from Euglena gracilis.LinkIT
Hammond MJ, Nenarokova A, Butenko A, Zoltner M, Dobáková EL, Field MC, Luke? J
Molecular biology and evolution, 2020
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0

4.  Recycling pathways in cold-water coral reefs: Use of dissolved organic matter and bacteria by key suspension feeding taxa.LinkIT
Maier SR, Kutti T, Bannister RJ, Fang JK, van Breugel P, van Rijswijk P, van Oevelen D
Scientific reports, 2020
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0

5.  Adenine DNA methylation, 3D genome organization, and gene expression in the parasite Trichomonas vaginalis.LinkIT
Lizarraga A, O'Brown ZK, Boulias K, Roach L, Greer EL, Johnson PJ, Strobl-Mazzulla PH, de Miguel N
Proceedings of the National Academy of Sciences of the United States of America, 2020
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0

6.  A metagenomic assessment of microbial eukaryotic diversity in the global ocean.LinkIT
Obiol A, Giner CR, Sánchez P, Duarte CM, Acinas SG, Massana R
Molecular ecology resources Mol Ecol Resour A metagenomic assessment of microbial eukaryotic diversity in the global ocean. 10.1111/1755-0998.13147 Surveying microbial diversity and function is accomplished by combining complementary molecular tools. Among them, metagenomics is a PCR free approach that contains all genetic information from microbial assemblages and is today performed at a relatively large scale and reasonable cost, mostly based on very short reads. Here, we investigated the potential of metagenomics to provide taxonomic reports of marine microbial eukaryotes. We prepared a curated database with reference sequences of the V4 region of 18S rDNA clustered at 97% similarity and used this database to extract and classify metagenomic reads. More than half of them were unambiguously affiliated to a unique reference whilst the rest could be assigned to a given taxonomic group. The overall diversity reported by metagenomics was similar to that obtained by amplicon sequencing of the V4 and V9 regions of the 18S rRNA gene, although either one or both of these amplicon surveys performed poorly for groups like Excavata, Amoebozoa, Fungi and Haptophyta. We then studied the diversity of picoeukaryotes and nanoeukaryotes using 91 metagenomes from surface down to bathypelagic layers in different oceans, unveiling a clear taxonomic separation between size fractions and depth layers. Finally, we retrieved long rDNA sequences from assembled metagenomes that improved phylogenetic reconstructions of particular groups. Overall, this study shows metagenomics as an excellent resource for taxonomic exploration of marine microbial eukaryotes. © 2020 John Wiley & Sons Ltd. Obiol Aleix A https://orcid.org/0000-0002-5475-9827 Department of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona, Spain. Giner Caterina R CR https://orcid.org/0000-0002-7267-0260 Department of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona, Spain. Sánchez Pablo P https://orcid.org/0000-0003-2787-822X Department of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona, Spain. Duarte Carlos M CM https://orcid.org/0000-0002-1213-1361 Red Sea Research Center (RSRC), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia. Acinas Silvia G SG https://orcid.org/0000-0002-3439-0428 Department of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona, Spain. Massana Ramon R https://orcid.org/0000-0001-9172-5418 Department of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona, Spain. eng 3362 King Abdullah University of Science and Technology (KAUST) CSD2008-00077 Spanish Ministry of Economy and Competitiveness projects Malaspina-2010 CTM2016-75083-R ALLFLAGS Spanish FPI Journal Article 2020 03 11 England Mol Ecol Resour 101465604 1755-098X IM amplicon sequencing diversity global ocean marine protists metagenomics 2019 10 09 2020 01 31 2020 02 10 2020 2 18 6 0 2020 2 18 6 0 2020 2 18 6 0 ppublish 32065492 10.1111/1755-0998.13147 REFERENCES, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>7.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>A two-way switch for inositol pyrophosphate signaling: Evolutionary history and biological significance of a unique, bifunctional kinase/phosphatase.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Randall TA, Gu C, Li X, Wang H, Shears SB<br><font color=gray><i>Advances in biological regulation, 2020</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>8.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Who Needs a Contractile Actomyosin Ring? The Plethora of Alternative Ways to Divide a Protozoan Parasite.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Hammarton TC<br><font color=gray><i>Frontiers in cellular and infection microbiology, 2019</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>9.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>Leaf transcriptome data of two tropical medicinal plants: <i>Sterculia lanceolata</i> and <i>Clausena excavata</i>.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Eom SH, Na JK<br><font color=gray><i>Data in brief, 2019</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br>10.  <a href=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0 class=title>A cytonaut's guide to protein trafficking in Giardia lamblia.</a><a href=http://ubio.org/tools/linkit.php?map%5B%5D=all&link_type=2&url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0><img src=linkit.png border=0 title='LinkIT' alt='LinkIT'></a> <br><span class=j>Faso C, Hehl AB<br><font color=gray><i>Advances in parasitology, 2019</i></font><br><font color=#008000>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=0<br></font></span><br><br><br><table cellspacing=0 cellpadding=0 align=center><tr valign=bottom><td align=center><img src=p.png border=0></td><td align=center><img src=o_red.png border=0></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=2><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=3><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=4><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=5><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=6><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=7><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=8><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=9><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=10><img src=o_yellow.png border=0></a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=2><img src=rtal.png border=0></a></td></tr><td align=center></td><td align=center>1</td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=2>2</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=3>3</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=4>4</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=5>5</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=6>6</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=7>7</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=8>8</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=9>9</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=10>10</a></td><td align=center><a href=http://ubio.org/portal/index.php?search=Rhipidoxylomyia+excavata+Mamaev%2C+1964&category=l&client=pubmed&startPage=2>»</a></td></tr></table></table></tr></table></td><script src="http://www.google-analytics.com/urchin.js" type="text/javascript"> </script> <script type="text/javascript"> _uacct = "UA-634822-1"; urchinTracker(); </script> </BODY> </HTML>